生物信息学主任(女性健康与器官健康)
Associate Director of Bioinformatics (Women's Health and Organ Health)
Natera 正在寻找一位高级经理,领导我们女性健康和器官健康研究组织中的生物信息学科学家团队。您将负责诊断项目的研究和检测开发的科学规划与执行,并负责创建可投入生产的流程组件。您将管理您的团队及其职业发展,新产品开发的研究策略,以及研究成果向生产的交接。
该职位需要在算法和检测开发方面有深厚经验,具备多种模式下的下一代测序(NGS)数据处理经验,以及在受监管(CLIA)环境中的诊断产品研究与开发的全流程经验。您将评估新技术和NGS检测方法,实施优化性能的方法,并从生物信息学角度协助定义产品特性,结合研发、产品和实验室主管的输入。
主要职责:
团队领导与发展:领导并指导生物信息学科学家团队,负责他们的职业发展、职责以及团队自我设定的标准。
研究策略:负责新产品开发背后的研究策略,从范围界定到执行,与跨职能利益相关者合作确定团队的任务及优先级。
检测科学:领导生物信息学分析用于检测开发和优化,并与实验室科学家一起解决实验问题。这涵盖多组学方法,包括甲基化和片段组学以及其他游离DNA(cfDNA)相关特征。同时也涵盖短读长和长读长测序,以及混合捕获和扩增子靶向富集。
研究设计与数据质量:与实验室团队合作,在研究和可行性阶段进行研究设计,涵盖新技术评估、优化和性能确定。确保生成的数据可靠,再由其他人进行后续工作。
分析方法改进:建议并原型改进分析流程,包括变异检测、质量控制和特定模态的处理:甲基化识别、片段大小和末端基序分析、深度靶向面板的错误抑制,以及结构变异识别。
生产就绪与交接:将研究原型转化为稳定的生产流程。要求团队遵循软件工程实践,包括版本控制、测试、持续集成和交付。
查看英文原文
Natera is seeking an Associate Director to lead a team of Bioinformatics Scientists in our Women's Health and Organ Health research organization. You will oversee the scientific planning and execution of research and assay-development of diagnostic projects, and you will be responsible for creating production-ready pipeline components. You will manage your team and its professional growth, the research strategy behind new product development, and the handoff of research work into production.
The role calls for deep experience in algorithm and assay development, NGS data processing across multiple modalities, and the full life cycle of diagnostic product research and development in a regulated (CLIA) setting. You will evaluate new technologies and NGS assays, implement methods to optimize performance, and help define the product profile from a bioinformatics perspective, with input from R&D, Product, and Laboratory Directors.
Primary Responsibilities:
Team Leadership and Development: Lead and mentor a team of Bioinformatics Scientists. Own their professional growth, their responsibilities, and the standard the team holds itself to.
Research Strategy: Own the research strategy behind new product development, from scoping through execution, working with cross-functional stakeholders on what the team takes on and in what order.
Assay Science: Lead bioinformatics analysis for assay development and optimization, and troubleshoot experiments alongside laboratory scientists. This spans multi-omic approaches including methylation and fragmentomics and other cell-free DNA (cfDNA) derived features. It also spans short-read and long-read sequencing and both hybrid-capture and amplicon target enrichment.
Study Design and Data Quality: Partner with laboratory teams on study design at the research and feasibility stage, covering new technology assessment, optimization, and performance determination. Make sure the resulting data holds up before anyone builds on it.
Analysis Method Improvement: Advise and prototype improvements to analysis pipelines, including variant detection, quality control, and modality-specific processing: methylation calling, fragment-size and end-motif analysis, error suppression for deep targeted panels, and structural-variant calling.
Production Readiness and Handoff: Move research prototypes into stable production workflows. Hold the team to software engineering practice, including version control, testing, continuous integration and delivery, and containerization. Automate the routine parts of research data management, pipeline execution, and reporting so the team's time goes to science.
Ways of Working: AI is a routine part of the work here. As the leader of this team you set what correct use looks like: what an agent may conclude on its own, and what requires a scientist to sign off. We do not screen for prior experience with these tools, and many strong candidates come from environments where they were restricted; we provide the tooling and the ramp time.
Cross-functional Partnership: Work with data science, molecular biology, pipeline engineering, biostatistics, quality assurance, and laboratory operations on new products and on the transition of research work into production. Act as the subject-matter expert those groups come to, and explain findings and the roadmap clearly at every level of the company.
What success looks like after a year:
- The team has a research roadmap you own, and progress against it is visible outside the team.
- You independently advise and guide research strategies in cross functional settings.
- New analysis methods from your team are implemented within production code and demonstrate expected performance on benchmark studies..
- You and team members become trusted experts that other functions direct their hard questions to, and can independently support decision making.
- AI agent-assisted work is normal on the team, with a standard for it that you set.
Qualifications:
- Ph.D. in Bioinformatics, Computational Biology, Computer Science, Mathematics, Engineering, Biostatistics, or a related field. (An M.S. with equivalent experience considered).
- 7+ years in bioinformatics, including 3+ years leading scientists and working across functions.
- Demonstrated ownership of a team that took scientific research into real clinical use, not only to a result.
- Demonstrated experience developing or scientifically guiding diagnostic sequencing assays.
Knowledge, Skills, and Abilities:
What we are screening for
- Deep expertise in next-generation sequencing analysis: hybrid-capture or amplicon-based target enrichment designs, sequencing quality control, secondary analysis, and variant calling.
- Experience with cell-free DNA sequencing and other omics data, especially in a diagnostics setting. Preferred to have some exposure to multiomics types : methylation, fragmentomics, or related cfDNA signals.
- Working knowledge of how a diagnostic product moves through development in a regulated, accredited setting, including the practices and standards that apply.
- Strong Python, programming, and data analysis skills.
- Fluency in exploratory data analysis and visualization on complex data sets, and the ability to translate findings into actionable recommendations.
- Understanding of sequencing workflows from sample extraction through the instrument, deep enough to tell a biology problem from an analysis problem.
- A demonstrated record of assessing a new platform, assay chemistry or method against established benchmarks..
- Clear communication of technical detail to people who do not share your background.
- The ability to run several objectives and timelines at once without close supervision.
Strong candidates may also have
- Long-read sequencing (PacBio HiFi, Oxford Nanopore) in addition to short-read (Illumina).
- R, shell scripting, or Java.
- Cloud computing (AWS, GCP) and workflow orchestration (Snakemake, WDL, Nextflow, Cromwell).
- Containerization (Docker, Kubernetes) for reproducible, production-grade analyses.
- A record of conference presentations or peer-reviewed publication.
- A desire to work in a fast-paced environment where a small team has high impact.
The pay range is listed and actual compensation packages are based on a wide array of factors unique to each candidate, including but not limited to skill set, years & depth of experience, certifications and specific office location. This may differ in other locations due to cost of labor considerations.
Remote USA
$166,600—$202,000 USD
OUR OPPORTUNITY
Natera™ is a global leader in cell-free DNA (cfDNA) testing, dedicated to oncology, women’s health, and organ health. Our aim is to make personalized genetic testing and diagnostics part of the standard of care to protect health and enable earlier and more targeted interventions that lead to longer, healthier lives.
The Natera team consists of highly dedicated statisticians, geneticists, doctors, laboratory scientists, business professionals, software engineers and many other professionals from world-class institutions, who care deeply for our work and each other. When you join Natera, you’ll work hard and grow quickly. Working alongside the elite of the industry, you’ll be stretched and challenged, and take pride in being part of a company that is changing the landscape of genetic disease management.
WHAT WE OFFER
Competitive Benefits - Employee benefits include comprehensive medical, dental, vision, life and disability plans for eligible employees and their dependents. Additionally, Natera employees and their immediate families receive free testing in addition to fertility care benefits. Other benefits include pregnancy and baby bonding leave, 401k benefits, commuter benefits and much more. We also offer a generous employee referral program!
For more information, visit www.natera.com.
Natera is proud to be an Equal Opportunity Employer. We are committed to ensuring a diverse and inclusive workplace environment, and welcome people of different backgrounds, experiences, abilities and perspectives. Inclusive collaboration benefits our employees, our community and our patients, and is critical to our mission of changing the management of disease worldwide.
All qualified applicants are encouraged to apply, and will be considered without regard to race, color, religion, gender, gender identity or expression, sexual orientation, national origin, genetics, age, veteran status, disability or any other legally protected status. We also consider qualified applicants regardless of criminal histories, consistent with applicable laws.
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